Meet the EMBL Events Team: Jane

PHOTO: Jane Reynolds

Today’s interview is with EMBL-EBI’s Jane Reynolds. Jane is one of the event organisers in the team, and joined in December 2020. Jane’s focus is on the on-site and virtual training courses.

At EMBL since: December 2020
Number of organised courses: 1

 Favourite place in Hinxton area? Having joined EMBL-EBI just before Christmas, I haven’t been able to explore Hinxton yet. I did enjoy a virtual tour of the conference centre though, which gave me an insight of where the course dinners take place.

What is the first thing you do before a course starts and the first thing you do after a course finishes? Before an event starts, I remind myself of the hard work and preparation that’s already been done and that the best thing I can do from here on in is be present and ready to deal with anything that might arise. After an event finished? Well, it sounds a bit dull but I usually make a quick list of things that could be improved (as well as those that went really well). Particularly working in new formats, it’s often only by running an event that you notice the small changes that can be made to improve the experiences of delegates or speakers. I like to capture these while they are fresh in my mind.

What are the challenges/differences of organising a virtual course? One of the major changes has been how big chunks of work have shifted closer to the start date of an event; for example, delegates tend to sign up later to online events than in-person events, even if they are advertised for the same length of time as usual, so the timeframe for dealing with the administration related to this is shorter.  The work definitely has a different rhythm to it and the tools and systems have changed but the reason we’re doing it is the same.  Remembering this has helped me to adapt.  Although I have to say I am really looking forward to meeting delegates (and my new colleagues!) in person when the time comes.

You’ve been working from home since you started your role at EMBL-EBI; how has this been for you? As well as working from home, I’ve been lucky enough to start a new role in the past year, and it’s been an interesting (hopefully once-in-a-lifetime!) experience.  Luckily the Training Team at EMBL-EBI have been wonderful in sharing their knowledge with me and given me a very warm virtual welcome.

If you weren’t a EMBL-EBI events organisers what would you be? Probably a teacher of some kind.  Before I started working in events and engagement, I worked as an English Language Assistant, which I really enjoyed, so ideally I’d combine teaching and travel.

PHOTO: weekend city break in Copenhagen May 2020

What is the strangest/funniest thing that has ever happened in a course? My birthday is in July and in my past jobs this has been the busiest time – either at Graduation events or summer events – so I have often spent it working, but never in an office!  I’ve been organising table plans in Liverpool Cathedral, at a Massive Attack concert in a disused train depot or hosting tours of new exhibitions…one of my favourite things about working in events is that there is rarely a dull moment!

If you were a superhero what power would you like to have?  I love learning languages but it’s hard to find the time…so definitely the ability to speak and understand different languages without having to learn verb tables!

What is your favourite TV show? Like everyone I’ve watched a lot more TV than usual over the past year, but The Sopranos – which has stood up to a rewatch or two – remains my favourite.

Upcoming events that Jane is organising: Cancer genomics 2021 – virtual 

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Meet the Trainers – Tobias Rausch and Alexey Larionov

On the occasion of World Cancer Day (4 February), we meet two of the trainers of the virtual EMBL Course: Cancer Genomics  (17 – 21 May 2021) – Tobias Rausch and Alexey Larionov.

PHOTO: EMBL Photolab

Tobias Rausch (TR) received his PhD in “Computational Biology and Scientific Computing” at the International Max Planck Research School in 2009. He then started to work at the European Molecular Biology Laboratory (EMBL) as a bioinformatician. His primary research interests are population and cancer genomics, structural variant discovery and omics computational methods development. (https://github.com/tobiasrausch).

 

PHOTO: Alexey Larionov

Initially educated as a clinical oncologist in Russia, Alexey Larionov (AL) switched to  experimental oncology upon completion of his PhD. Initially he worked as a postdoctoral researcher in Edinburgh University studying transcriptomics of breast cancer, with a focus on markers and mechanisms of endocrine response and resistance.  Working with data-rich methods (qPCR, micro-arrays, NGS) he became interested in data analysis and switched to bioinformatics. Since completing his MSc in Applied Bioinformatics, Alexey has worked as a bioinformatician at Cambridge University, focusing on NGS data analysis and heritable predisposition to cancer. See http://larionov.co.uk for more details.

What is your research focus?

TR: Computational genomics.

ALHeritable predisposition to cancer

Why did you choose to become a scientist?

TR: When I started at EMBL I saw myself as a software engineer who loves to design, develop and implement algorithms to solve data analysis problems. With the advent of high-throughput sequencing, this engineering background gave me a competitive edge as a data scientist, and that’s how it happened!

ALIt was interesting…

Where do you see this field heading in the future?

TR: Nowadays cancer genomics is a data-driven team science, but it is a long way from obtaining data to obtaining insight. In the age of analytics we all have to wrap our heads around multi-domain data with spatio-temporal resolution, ideally in real-time.

AL: I assume that the question is about translational cancer research in general.  I expect that in the near future the field needs better integration of different types of biological data and better collection of relevant clinical data. 

How has training influenced your career?

TR: I think training is essential to get you started. Training is like a kind person who takes your hand and guides you through unknown territory. It goes along with mentorship and I was lucky enough to have good training and good mentorship already as a student.

ALSince my initial clinical and bioinformatics degrees, cancer research has changed so much that I would not be able to even understand current papers if I hadn’t taken regular in-depth training in different aspects of computing and bioinformatics. 

How has cancer research changed over the years?

TR: I hope I am still too young to answer that :-). I leave that question for Bert Vogelstein or Robert A. Weinberg.

ALCancer research has become much more complex and powerful because of the development of new methods; specifically significant progress in bioinformatics, sequencing and human genomics.

Which methods and new technologies will be addressed in the course?

TR: We try to give an overview of how high-throughput sequencing can be applied in cancer genomics. We cover a range of technologies (short-read and long-read sequencing), data types (RNA-Seq, DNA-Seq and ATAC-Seq) and data modalities (bulk and single-cell sequencing), and last but not least – we take a deep dive into cancer genomics data analysis.

ALIn my sections of the course, I will discuss established methods for the analysis of bulk RNA sequencing, focusing on differential gene expression.  Then I will touch on the new methods being developed for the analysis of long-read RNA sequencing.  

What learning outcomes should participants expect to take home after the course?

TR: To come back to my previous answer: I hope after the course, cancer genomics won’t be an unknown territory anymore for the participants. I hope we pave the way and then it’s up to the students to make something out of it.

ALIn my section of the course, participants will learn:

1) Bioinformatics algorithms and tools for QC, alignment, and gene expression measurement in bulk short-read RNA-sequencing data

2) Current approaches to analysis of long-read RNA-seq data, comparing the Oxford Nanopore and PacBio sequencing technologies.


Interested in this course? Apply by 26 February.

For more upcoming events on cancer research take a look at our event listing.

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Meet the EMBL Events Team: Raili Pall

In the middle of 2020, Raili Pall joined the Course and Conference Office (CCO) team. She was the first member to start working with us remotely and it was quite a journey to get everything in place. Despite all this, she was a total hero, learned everything so quickly and started talking the CCO “language” (yeah, we kind of talk in codes for our events) within a few weeks!

Check out her interview to the end, you might want to read her favourite book🙂.

Railli Pall PHOTO: Railli Pall

At EMBL since: June 2020
Number of organised conferences/courses: 4

Favourite place in Heidelberg: 
Altstadt (Old Town). I find it really cute, full of nice cafés and restaurants.

Old Town Heidelberg Marktplatz (2017). PHOTO Achim Mende/Heidelberg Marketing GmbH

First thing you do before a conference/course starts and first thing you do after it finishes:
Before the conference/course starts I’ll go through my checklist to be sure I didn’t forget anything. After a conference/course finishes I say a big thank you to the scientific organisers, speakers and the participants for making it all possible.

What are the challenges/differences of organising a virtual conference or course?
The most challenging is probably the social aspect – working out how to increase the audience interaction and keep them engaged during the virtual event.

What do you miss most about life before the pandemic?
Travelling. I love travelling and discovering new cultures, food and people. I can’t wait to start planning some trips & travel as soon as it’s safe again.

If you weren’t an event organiser, what would you be?
I’d love to be an interior designer. I can spend hours in design shops and reading design & décor magazines. I find it incredible how simple elements can change the look and feel of a space.

If you were a superhero, what power would you like to have?
I would like my superpower to be able to speak all the languages in the world. I find languages fascinating and it would be amazing to be able to communicate with anyone in their language.

Favourite:
Recipe: I love Indian food, so I’d probably choose butter chicken. I recently learned how to cook it myself and am very proud of it😊 .

Book: „On nagu pole“ (“It is like it isn’t”) by Estonian author Alan Adojaan. I read it quite long time ago, but it’s one of the most funny and inspiring travel-books I’ve ever read.

Film: I love to watch movies, so it’s difficult to choose one. I like Paolo Sorrentino (‘La Grande Bellezza’, ‘Youth’, ‘Loro’) and Quentin Tarantino movies. One of the recent highlights was ‘Parasite’ by Bong Joon-ho that I finally managed to watch.

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Meet the EMBL Events Team: Marina

PHOTO: Marina Pujol
PHOTO: Marina Pujol

Today’s interview is with EMBL-EBI’s Marina Pujol. Marina is one of the event organisers in the team, with a focus on the on-site and virtual training courses as well as assisting with the delivery of events for the CABANA project.

At EMBL since: June 2018
Number of organised courses: 21

Favourite place in Hinxton area?
Audley End House. This is a gorgeous Victorian country house surrounded by beautiful gardens. They host many activities throughout the year, which my family and I love to go to, for example during Christmas they have their gardens decorated with lights and it looks magical.

Audley End miniature railway at Christmas
PHOTO: Audley End miniature railway at Christmas

What is the first thing you do before a course starts and first thing you do after a course finishes?
First thing, getting a large coffee and checking calls and emails. Last thing: take a deep breath, smile and relax.

What are the challenges/differences of organising a virtual course?
In my opinion, before the course starts everything is similar to an onsite course. The moment of truth arrives when everybody logs in the call. If any of the organisers or the speakers have technical issues at that moment… time stops! I am always crossing fingers wishing that everybody’s connections work fine! 

You’ve been working from home for nine months now; how have you adapted your role during this time?
To me, the positive part of working from home is that you don’t have interruptions usually, and can concentrate more. However, I have to make sure that I still have that “human” contact with my colleagues. Breaking for a chat it’s always nice and much needed!

If you weren’t a course officer what would you be?
Anything to do with animals, but especially with dogs. I always had dogs around me and I love to spend time with them. Going for long walks together or cuddling them is priceless.

What is the strangest/funniest thing that has ever happened in a course?
In the middle of a keynote lecture, a delegate’s phone went off and Siri said ‘Sorry, I don’t understand’. Everybody laughed!

If you were a superhero what power would you like to have?
Flying. Just last night I dreamt that I was flying above a kind of a Disney lookalike castle.

Favourite book?
El psicoanalista by John Katzenbach

Upcoming events Marina is organising:
Managing a bioinformatics core facility 2021 – Virtual
Applications open shortly – sign up for alerts now.

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Meet the EMBL Events Team: Rianne

We are very happy to welcome Rianne Moes to the Course and Conference Office marketing team! Rianne, her husband and her son just arrived to Heidelberg from Utrecht, in the Netherlands, a couple of months ago. New job, new house, new house again, taking care of a baby boy, all of this in the middle of a pandemic — you go girl!

At her previous job, she was a Communications Officer at the public library in Utrecht, with the responsibility to promote about 150 cultural events a month at the 13 library buildings scattered around the city.

Rianne Moes PHOTO: Rianne Moes

You just arrived in Heidelberg and settling down is certainly hectic. Do you already have a favourite place in Heidelberg where you go to relax?
I live near the Rohrbach area right now, and I really like the Rathausstrasse. It’s like a little village, with the town hall and some nice restaurants, bars and a bakery. It is nice to sit down on the Rorbach terrace with a drink or grab an ice cream at Illegally Tasty (they have great pasta too!).

What are the challenges of starting a new job in times of a pandemic?
First of all, I had my job interview virtually and I had never been to Heidelberg before. So, I didn’t really know what to expect. But I like a bit of an adventure!

And now, working mostly from home, it is a different vibe. Especially in the first weeks, you have so many questions that you just want to quickly ask your colleagues, instead of sending them emails or putting meetings in their calendar. But luckily, I get to go to the office quite a lot and have now also met most of my colleagues!

If you weren’t a Marketing Officer, what would you be?
A teacher probably. Maybe I will become a teacher one day, who knows! It has some similarities to marketing, because you really need to be able to place yourself into someone else’s shoes (or head, actually) and see their view on things. Also, I believe in simple, straightforward and appealing content, and explaining things to students should also be simple, straightforward and appealing.

If you were a superhero what power would you like to have?
The ability to read minds. I would love to know what everyone is thinking.

What’s your favourite:
Recipe: Melanzane alla parmigiana, that’s an Italian dish with fried eggplant, tomatoes and lots of mozzarella and parmesan cheese. Wouldn’t mind eating this every day.

Book: I actually worked in a library (as a marketing officer though), so I should be able to answer this. Maybe I should promote the first Dutch writer that (just) won the Booker prize: Marieke Lucas Rijneveld (1991) with their (Marieke identifies as both male and female) book the Discomfort of Evening.

TV Series: The Wire. I think everyone should watch this. And really, keep watching, it took me a few episodes to get into the slang and the story, but this is really the best series I have ever watched.

 

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